Stem-loop dre-mir-19d

Accession

MI0001906

Description

Danio rerio dre-mir-19d precursor miRNA

Literature search

4 open access papers mention dre-mir-19d
(28 sentences)

Sequence

4096 reads, 299 reads per million, 11 experiments

guugugugacggucAGCUUUGCGGGGUGGGCAGUCAGCcuccguguggccgcUGUGCAAACCCAUGCAAAACUGAgcgcugcgcuac
...(((((.((.((((.((((((((((..(((..((((..((....))..)))))))..)))).)))))).)))).)).)))))...

Structure

guu     a  g    C      -    GG   GU    cu  g 
   gugug cg ucAG UUUGCG GGGU  GCA  CAGC  cc u
   ||||| || |||| |||||| ||||  |||  ||||  ||  
   cgcgu gc AGUC AAACGU CCCA  CGU  GUcg  gg g
cau     c  g    A      A    AA   --    cc  u 

Annotation confidence High

Genome context

chr14: 100660-100746 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from dre-mir-19d

Mature dre-miR-19d-3p

• Accession: MIMAT0001785
• Description: Danio rerio dre-miR-19d-3p mature miRNA
• Sequence: 53 - UGUGCAAACCCAUGCAAAACUGA - 75
• Evidence: experimental ; cloned [1]

Mature dre-miR-19d-5p

• Accession: MIMAT0031941
• Description: Danio rerio dre-miR-19d-5p mature miRNA
• Sequence: 15 - AGCUUUGCGGGGUGGGCAGUCAGC - 38
• Evidence: not_experimental

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293