Stem-loop dre-mir-137-2

Accession

MI0002001

Description

Danio rerio dre-mir-137-2 precursor miRNA mir-137

Gene
family

RF00694; mir-137

Literature search

6 open access papers mention dre-mir-137-2
(110 sentences)

Sequence

3399 reads, 217 reads per million, 8 experiments

guucuguuguuucccucuauaaaggacucucuucggugACGGGUAUUCUUGGGUGGAUAAUAcggcucucguugUUAUUGCUUAAGAAUACGCGUAgucgaggagagucaugucggcggcgagagagc
(((((.(((((.((..(.......((((((((((((..(((.(((((((((((((.((((((((.....)).))))))))))))))))))).)))..))))))))))))..)..)).))))).)))))

Structure

     g     u  cu uauaaag            ug   G             G      -  g 
guucu uuguu cc  c       gacucucuucgg  ACG GUAUUCUUGGGUG AUAAUA cg c
||||| ||||| ||  |       ||||||||||||  ||| ||||||||||||| |||||| || u
cgaga agcgg gg  g       cugagaggagcu  UGC CAUAAGAAUUCGU UAUUgu gc c
     g     c  cu -----ua            gA   G             -      u  u 

Annotation confidence High

Genome context

chr24: 30352608-30352735 [+]

Mature dre-miR-137-3p

• Accession: MIMAT0001834
• Description: Danio rerio dre-miR-137-3p mature miRNA
• Sequence: 75 - UUAUUGCUUAAGAAUACGCGUA - 96
• Evidence: experimental ; cloned [1]

Mature dre-miR-137-5p

• Accession: MIMAT0031972
• Description: Danio rerio dre-miR-137-5p mature miRNA
• Sequence: 39 - ACGGGUAUUCUUGGGUGGAUAAUA - 62
• Evidence: not_experimental

References

1. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293