miRBase entry: dre-mir-144

Stem-loop dre-mir-144

Accession

MI0002009

Description

Danio rerio dre-mir-144 precursor miRNA mir-144

Gene
family?

RF00682; mir-144

Literature search

5 open access papers mention dre-mir-144
(17 sentences)

Sequence

1752 reads, 140 reads per million, 9 experiments

gcucucuagacaGGAUAUCAUCGUAUACUGUAAGUucauuauugagacacUACAGUAUAGAUGAUGUACUauccagggggucaacgagc
(((((((.((.((.((((((((.(((((((((..((((....))))....))))))))))))))))).)).)).)))))))........

Structure

--------       a  c  G        G         --AG    u 
        gcucucu ga aG AUAUCAUC UAUACUGUA    Uuca u
        ||||||| || || |||||||| |||||||||    ||||  
        uggggga cu UC UGUAGUAG AUAUGACAU    gagu a
cgagcaac       c  a  A        -         caca    u

Annotation confidence High

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Genome context

chr5: 42272074-42272162 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-144

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dre-miR-144-3p

Accession	MIMAT0001841
Description	Danio rerio dre-miR-144-3p mature miRNA
Sequence	51 - UACAGUAUAGAUGAUGUACU - 70
Evidence	experimental cloned [1]
Database links
Predicted targets

Mature dre-miR-144-5p

Accession	MIMAT0031975
Description	Danio rerio dre-miR-144-5p mature miRNA
Sequence	13 - GGAUAUCAUCGUAUACUGUAAGU - 35
Evidence	not_experimental
Database links

References

PubMed ID: 15937218
The developmental miRNA profiles of zebrafish as determined by small RNA cloning
"Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
"Genes Dev (2005) 19:1288-1293