miRBase entry: ptc-MIR166c

Stem-loop ptc-MIR166c


Accession
MI0002220
Description
Populus trichocarpa ptc-MIR166c precursor miRNA

Literature search
6 open access papers mention ptc-MIR166c
(23 sentences)

Sequence

cuuuuuuugaggggaauguugucuggcucgaggacucuuucuugaucagucugaucaaguguucuaucuuuagaucuaauaucuuagaucauguguuagggucgUCGGACCAGGCUUCAUUCCCCccaauuauu
......(((.((((((((..((((((.((((.((((((..((((((((...)))))))).............(((((((....))))))).......)))))).)))).))))))..)))))))).))).....

Structure
cuuuuu   a        uu      c    g      ------------------------------------uu        g 
      uug ggggaaug  gucugg ucga gacucu                                      cuugauca  
      ||| ||||||||  |||||| |||| ||||||                                      |||||||| u
      aac CCCCUUAC  CGGACC GGCU cuggga                                      gaacuagu  
-uuauu   c        UU      A    g      uuguguacuagauucuauaaucuagauuucuaucuugu        c 


Annotation confidence Not enough data
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Genome context
CM000338.2: 13513492-13513625 [+]

Database links

Mature ptc-miR166c

Accession MIMAT0001926
Description Populus trichocarpa ptc-miR166c mature miRNA
Sequence 105 - UCGGACCAGGCUUCAUUCCCC - 125
Evidence not_experimental

References

  1. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13

  2. PubMed ID: 16973872
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
    "Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm"
    "Science (2006) 313:1596-1604