miRBase entry: ppy-mir-214

Stem-loop ppy-mir-214

Accession

MI0002856

Description

Pongo pygmaeus ppy-mir-214 precursor miRNA

Sequence

ggccuggcuggacagaguugucaugugucugccugucuacacuugcugugcagaacauccgcucaccuguACAGCAGGCACAGACAGGCAGucacaugacaacccagccu
.....((((((.....(((((((((((.((((((((((...((((((((((((.............))))))))))))...)))))))))).))))))))))))))))).

Structure

ggccu      acaga           u          aca            aacau 
     ggcugg     guugucaugug cugccugucu   cuugcugugcag     c
     ||||||     ||||||||||| ||||||||||   ||||||||||||     c
     ccgacc     caacaguacac GACGGACAGA   GGACGACAuguc     g
----u      -----           u          CAC            cacuc

Annotation confidence Not enough data

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Comments

Berezikov et al. used primers designed from human miRNA gene flanking sequence to amplify miRNA precursor regions in primates [1]. The expression of the mature miRNA was not validated.

Genome context

chr1: 78929979-78930088 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppy-mir-214

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-214

Accession	MIMAT0002553
Description	Pongo pygmaeus ppy-miR-214 mature miRNA
Sequence	71 - ACAGCAGGCACAGACAGGCAG - 91
Evidence	not_experimental

References

PubMed ID: 15652478
Phylogenetic shadowing and computational identification of human microRNA genes
"Berezikov E, Guryev V, van de Belt J, Wienholds E, Plasterk RH, Cuppen E"
"Cell (2005) 120:21-24