Stem-loop rno-mir-487b

Accession

MI0003547

Description

Rattus norvegicus rno-mir-487b precursor miRNA

Literature search

6 open access papers mention rno-mir-487b
(72 sentences)

Sequence

94369 reads, 143 reads per million, 392 experiments

ugguacuuggagAGUGGUUAUCCCUGUCCUCUUCGcuucacuuaugccgAAUCGUACAGGGUCAUCCACUUuuucaguauca
(((((((.(((((((((....((((((.(..(((((.........).))))..).))))))....))))))))).)))))))

Structure

       u         UUAU      C UC    - uuc 
ugguacu ggagAGUGG    CCCUGU C  UUCG c   a
||||||| |||||||||    |||||| |  |||| |   c
acuauga uuuUUCACC    GGGACA G  AAgc g   u
       c         UACU      U CU    c uau 

Annotation confidence High

Genome context

chr6: 133877124-133877205 [+]

Clustered miRNAs

17 other miRNAs are < 10 kb from rno-mir-487b

Mature rno-miR-487b-5p

• Accession: MIMAT0017221
• Description: Rattus norvegicus rno-miR-487b-5p mature miRNA
• Sequence: 13 - AGUGGUUAUCCCUGUCCUCUUCG - 35
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-487b-3p

• Accession: MIMAT0003200
• Description: Rattus norvegicus rno-miR-487b-3p mature miRNA
• Sequence: 50 - AAUCGUACAGGGUCAUCCACUU - 71
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


2. PubMed ID: 16274478
   Identification of clustered microRNAs using an ab initio prediction method
   Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M
   BMC Bioinformatics (2005) 6:267