Stem-loop rno-mir-485

Accession

MI0003549

Description

Rattus norvegicus rno-mir-485 precursor miRNA

Literature search

8 open access papers mention rno-mir-485
(47 sentences)

Sequence

55880 reads, 11404 reads per million, 381 experiments

gauacuuggagAGAGGCUGGCCGUGAUGAAUUCgauucaucuaaacgaguCAUACACGGCUCUCCUCUCUUCuaguguc
((((((.(((((((((..(((((((((((.((((...........)))))))).)))))))..))))))))).))))))

Structure

      u         CU       -    A    auuc 
gauacu ggagAGAGG  GGCCGUG AUGA UUCg    a
|||||| |||||||||  ||||||| |||| ||||    u
cuguga CUUCUCUCC  UCGGCAC UACu gagc    c
      u         UC       A    -    aaau 

Annotation confidence High

Genome context

chr6: 133885299-133885377 [+]

Clustered miRNAs

20 other miRNAs are < 10 kb from rno-mir-485

Mature rno-miR-485-5p

• Accession: MIMAT0003203
• Description: Rattus norvegicus rno-miR-485-5p mature miRNA
• Sequence: 12 - AGAGGCUGGCCGUGAUGAAUUC - 33
• Evidence: experimental ; cloned [2], SOLiD [3]

Mature rno-miR-485-3p

• Accession: MIMAT0017222
• Description: Rattus norvegicus rno-miR-485-3p mature miRNA
• Sequence: 51 - CAUACACGGCUCUCCUCUCUUC - 72
• Evidence: experimental ; SOLiD [3]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


3. PubMed ID: 16274478
   Identification of clustered microRNAs using an ab initio prediction method
   Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M
   BMC Bioinformatics (2005) 6:267