Stem-loop dre-mir-34c

Accession

MI0004774

Description

Danio rerio dre-mir-34c precursor miRNA mir-34

Gene
family

RF00456; mir-34

Literature search

10 open access papers mention dre-mir-34c
(33 sentences)

Sequence

478 reads, 89 reads per million, 5 experiments

ugcuguguggucaccAGGCAGUGCAGUUAGUUGAUUACaauccauaaaguAAUCACUAACCUCACUACCAGGugaaggcuagua
(((((.((..(((((.((.((((..((((((.((((((..........))))))))))))..)))).)).)))))..)))))))

Structure

     u  gg     A  C    CA      U      aauc 
ugcug gu  ucacc GG AGUG  GUUAGU GAUUAC    c
||||| ||  ||||| || ||||  |||||| ||||||     
augau cg  aguGG CC UCAC  CAAUCA CUAAug    a
     -  ga     A  A    UC      -      aaau 

Annotation confidence High

Genome context

chr5: 57922284-57922367 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-34c

Mature dre-miR-34c-5p

• Accession: MIMAT0003759
• Description: Danio rerio dre-miR-34c-5p mature miRNA
• Sequence: 16 - AGGCAGUGCAGUUAGUUGAUUAC - 38
• Evidence: experimental ; cloned [1], in-situ [1], Northern [1]

Mature dre-miR-34c-3p

• Accession: MIMAT0032011
• Description: Danio rerio dre-miR-34c-3p mature miRNA
• Sequence: 51 - AAUCACUAACCUCACUACCAGG - 72
• Evidence: not_experimental

References

1. PubMed ID: 16698962
   Cloning and expression of new microRNAs from zebrafish
   "Kloosterman WP, Steiner FA, Berezikov E, de Bruijn E, van de Belt J, Verheul M, Cuppen E, Plasterk RH"
   "Nucleic Acids Res (2006) 34:2558-2569