miRBase entry: dre-mir-731

Stem-loop dre-mir-731

Accession

MI0004776

Description

Danio rerio dre-mir-731 precursor miRNA mir-731

Gene
family?

RF03622; mir-731

Literature search

1 open access papers mention dre-mir-731
(7 sentences)

Sequence

92369 reads, 7034 reads per million, 11 experiments

ugaugcugaucuggAAUGACACGUUUUCUCCCGGAUCGccagaaauauguuucgccaccgggaacuucgugucagccaagauuggcauca
((((((((((((((..(((((((.....((((((...((..((((....))))))..))))))....))))))).)).))))))))))))

Structure

            -  AA       UUUUC      AUC  ca    u 
ugaugcugaucu gg  UGACACG     UCCCGG   Gc  gaaa a
|||||||||||| ||  |||||||     ||||||   ||  ||||  
acuacgguuaga cc  acugugc     agggcc   cg  cuuu u
            a  -g       -uuca      -ac  --    g

Annotation confidence High

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Genome context

chr8: 26082534-26082623 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-731

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dre-miR-731

Accession	MIMAT0003761
Description	Danio rerio dre-miR-731 mature miRNA
Sequence	15 - AAUGACACGUUUUCUCCCGGAUCG - 38
Evidence	experimental cloned [1], Northern [1]
Database links
Predicted targets

References

PubMed ID: 16698962
Cloning and expression of new microRNAs from zebrafish
"Kloosterman WP, Steiner FA, Berezikov E, de Bruijn E, van de Belt J, Verheul M, Cuppen E, Plasterk RH"
"Nucleic Acids Res (2006) 34:2558-2569