Accession
MI0005860
Description
Drosophila melanogaster
dme-mir-998 precursor miRNA mir-998
Gene
family?
family?
RF03419;
mir-998
Literature search
1 open access papers mention dme-mir-998
(142 sentences)
(142 sentences)
Sequence
69390
reads,
2200
reads per million, 49 experiments
ccucgugucaaauucauuuuggaACUGAAUUCUCGUGGGUCUGCAcugacaacacugaccgcuccagggcaaauuguucauuuugaaauugaaauucugUAGCACCAUGAGAUUCAGCUCuggcgugaauuucaaacaugcau
...(((((.((((((((.(((((.((((((.((((((((((......)))..........(((.(((((.......((((...)))).......))))).))).))))))))))))).))))).))))))))...)))))...
...(((((.((((((((.(((((.((((((.((((((((((......)))..........(((.(((((.......((((...)))).......))))).))).))))))))))))).))))).))))))))...)))))...
Structure
ccu --c u A U ------------------------------------------------------ UG cgugu aaauucau uugga CUGAAU CUCGUGG GUC C ||||| |||||||| ||||| |||||| ||||||| ||| guaca uuuaagug gguCU GACUUA GAGUACC cag A uac aac c C - ACGAUgucuuaaaguuaaaguuuuacuuguuaaacgggaccucgccagucacaa uc
Annotation confidence
High
Do you think this miRNA is real?
Genome context
chr3R: 21621879-21622021 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from dme-mir-998
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature dme-miR-998-3p
| Accession | MIMAT0005518 |
| Description | Drosophila melanogaster dme-miR-998-3p mature miRNA |
| Sequence | 100 - UAGCACCAUGAGAUUCAGCUC - 120 |
| Evidence |
experimental
454 [1-2], Illumina [2] |
| Database links |
|
| Predicted targets |
|
Mature dme-miR-998-5p
| Accession | MIMAT0020898 |
| Description | Drosophila melanogaster dme-miR-998-5p mature miRNA |
| Sequence | 24 - ACUGAAUUCUCGUGGGUCUGCA - 45 |
| Evidence | not_experimental |
| Database links |
|
References
|
