Stem-loop rno-mir-879

Accession

MI0006121

Description

Rattus norvegicus rno-mir-879 precursor miRNA

Literature search

3 open access papers mention rno-mir-879
(4 sentences)

Sequence

128769 reads, 138 reads per million, 431 experiments

uucuagauccAGAGGCUUAUAGCUCUAAGCCuuggauaaaagaggCUUAUGGCUUCAAGCUUUCGGagcuggcgac
..((((.(((.(((((((..((((.((((((((........)))))))).))))..))))))).))).))))....

Structure

--uu    a   A       AU    C        gga 
    cuag ucc GAGGCUU  AGCU UAAGCCuu   u
    |||| ||| |||||||  |||| ||||||||    
    gguc aGG UUUCGAA  UCGG AUUCggag   a
cagc    g   C       CU    U        aaa 

Annotation confidence High

Genome context

chr4: 21673635-21673710 [-]

Mature rno-miR-879-5p

• Accession: MIMAT0005287
• Description: Rattus norvegicus rno-miR-879-5p mature miRNA
• Sequence: 11 - AGAGGCUUAUAGCUCUAAGCC - 31
• Evidence: experimental ; cloned [1], SOLiD [2]

Mature rno-miR-879-3p

• Accession: MIMAT0017291
• Description: Rattus norvegicus rno-miR-879-3p mature miRNA
• Sequence: 46 - CUUAUGGCUUCAAGCUUUCGG - 66
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249