Stem-loop rno-mir-883

Accession

MI0006126

Description

Rattus norvegicus rno-mir-883 precursor miRNA

Literature search

3 open access papers mention rno-mir-883
(4 sentences)

Sequence

1221 reads, 299 reads per million, 40 experiments

ugcacucaaUGCUGAGAGAAGUAGCAGUUACUuuuuacucuuaagUAACUGCAACAUCUCUCAGUAUuguaaggcuc
.((...(((((((((((((.((.((((((((((.........)))))))))).)).)))))))))))))....))..

Structure

-u  -acu             A  A          uuu 
  gc    caaUGCUGAGAGA GU GCAGUUACUu   a
  ||    ||||||||||||| || ||||||||||   c
  cg    guUAUGACUCUCU CA CGUCAAUgaa   u
cu  gaau             A  A          uuc 

Annotation confidence High

Genome context

chrX: 151260703-151260779 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from rno-mir-883

Mature rno-miR-883-5p

• Accession: MIMAT0017294
• Description: Rattus norvegicus rno-miR-883-5p mature miRNA
• Sequence: 10 - UGCUGAGAGAAGUAGCAGUUACU - 32
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-883-3p

• Accession: MIMAT0005290
• Description: Rattus norvegicus rno-miR-883-3p mature miRNA
• Sequence: 46 - UAACUGCAACAUCUCUCAGUAU - 67
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249