Stem-loop cre-MIR1166

Accession

MI0006227

Description

Chlamydomonas reinhardtii cre-MIR1166 precursor miRNA

Literature search

1 open access papers mention cre-MIR1166
(1 sentences)

Sequence

gcaaccacgccgcgcccugccggucccccacaguguaugacuccuuuuaccgcuacgaggauggacuagacaacccacgcaccgccuggugccgccgacucugcgccgggcccaugaggucaUGGACCUCGCGGCCCUGGAGGcccugguagccgccgcgccaugccaggccgucagcgcgccggacgcgccgacagccuggaauggcgcgccauuccagggccgccucuagggccgcgAGGUCCAUGACCUCAUGGGcccggcgcagagccggcuggaccagccggggcguggggucaucgaggccaccggcauagcgguagaaugauucguauaaccuagggcgccggcagggcgcggcgguguaguugc
((((((((((((((((((((((((.(((.....(((((((.((.(((((((((((.(.((.(((.((.((...(((((((.(((.(((((.(.((((.(((((((((((((((((((((((((((((((((((((((((((((((((((.....((.(((((((.((((((.(((.(((((.....))))).))).)))))).)))))))))....))))))))...))))))))))))))))))))))))))))))))))))))))))).)))).).))))).))).)))))))....)).)).)))))..).))))))))))).)).))))))).....))).)))))))))))))))).)))..)))))

Structure

     --   -                c   cacag       c  c           c -a  a   a  a  -caa       a   c     g c    a                                           ---        uagcc  c       g      c   a     c 
gcaac  cac gccgcgcccugccggu ccc     uguauga uc uuuuaccgcua g  gg ugg cu ga    cccacgc ccg cuggu c gccg cucugcgccgggcccaugaggucaUGGACCUCGCGGCCCUGGA   GGcccugg     gc gcgccau ccaggc guc gcgcg c
|||||  ||| |||||||||||||||| |||     ||||||| || ||||||||||| |  || ||| || ||    ||||||| ||| ||||| | |||| |||||||||||||||||||||||||||||||||||||||||||   ||||||||     || ||||||| |||||| ||| ||||| g
cguug  gug cggcgcgggacggccg ggg     auaugcu ag aagauggcgau c  cc acc ga cu    gggugcg ggc gacca g cggc gagacgcggcccGGGUACUCCAGUACCUGGAgcgccgggaucu   ccgggacc     cg cgcggua gguccg cag cgcgc g
     au   g                c   aucca       u  u           a gg  -   g  g  acug       g   c     g u    c                                           ccg        -uuac  -       a      a   c     a 

Annotation confidence Not enough data

Comments

Molner et al. cloned a number of additional minor products (cloned only once) from this hairpin precursor (not shown) [1].

Genome context

scaffold_36: 577911-578282 [-]

Mature cre-miR1166.1

• Accession: MIMAT0005422
• Description: Chlamydomonas reinhardtii cre-miR1166.1 mature miRNA
• Sequence: 123 - UGGACCUCGCGGCCCUGGAGG - 143
• Evidence: experimental ; cloned [1]

Mature cre-miR1166.2

• Accession: MIMAT0005423
• Description: Chlamydomonas reinhardtii cre-miR1166.2 mature miRNA
• Sequence: 240 - AGGUCCAUGACCUCAUGGG - 258
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17538623
   miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii
   "Molnar A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC"
   "Nature (2007) 447:1126-1129