Stem-loop bna-MIR390c

Accession

MI0006449

Description

Brassica napus bna-MIR390c precursor miRNA

Gene family

MIPF0000101; MIR390

Literature search

7 open access papers mention bna-MIR390c
(9 sentences)

Sequence

gcguaguagagaaguagcuguaAAGCUCAGGAGGGAUAGCGCCaugacucaucaccauuacuauaugucuuuguauauguaauggcgcuauccauccugaguuccauggcuucuucuugcuuuuaugu
((((((..((((((.((((((..(((((((((.((((((((((((.((..((.((.(..((.....))..).))))..)).)))))))))))).)))))))))..)))))).))))))....))))))

Structure

      --ua      u      aA         G            g  uc  c  c uu  u 
gcguag    gagaag agcugu  AGCUCAGGA GGAUAGCGCCau ac  au ac a  ac a
||||||    |||||| ||||||  ||||||||| |||||||||||| ||  || || |  || u
uguauu    uucuuc ucggua  uugaguccu ccuaucgcggua ug  ua ug u  ug a
      uucg      u      cc         a            a  ua  -  u uc  u 

Annotation confidence Not enough data

Genome context

EM:AC189355: 75822-75949 [+]

Mature bna-miR390c

• Accession: MIMAT0005604
• Description: Brassica napus bna-miR390c mature miRNA
• Sequence: 23 - AAGCUCAGGAGGGAUAGCGCC - 43
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17659282
   Cloning and characterization of microRNAs from Brassica napus
   "Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL"
   "FEBS Lett (2007) 581:3848-3856