Stem-loop oan-mir-29b-1

Accession

MI0006669

Description

Ornithorhynchus anatinus oan-mir-29b-1 precursor miRNA

Sequence

7677 reads, 157 reads per million, 5 experiments

gagguagaccacgauuuuaaagcuccuucaggaagCUGGUUUCAUAUGGUGGUUUAGauuuaacuacugagugucUAGCACCAUUUGAAAUCAGUGUucuugguggagaacggcugcacuu
(((((((.((............((((.(((((((((((((((((.((((((.(..(.(((((.....))))).)..).)))))).)))))))))).))))))).))))...)))))).)))

Structure

   -    a  acgauuuuaaag    u       -          U      G UU G     a 
gag guag cc            cucc ucaggaa gCUGGUUUCA AUGGUG U  A auuua c
||| |||| ||            |||| ||||||| |||||||||| |||||| |  | ||||| u
uuc cguc gg            gagg gguucuU UGACUAAAGU UACCAC A  u ugagu a
   a    -  ---------caa    u       G          U      G Uc g     c 

Annotation confidence High

Genome context

10: 5175427-5175547 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from oan-mir-29b-1

Mature oan-miR-29b-5p

• Accession: MIMAT0006808
• Description: Ornithorhynchus anatinus oan-miR-29b-5p mature miRNA
• Sequence: 36 - CUGGUUUCAUAUGGUGGUUUAG - 57
• Evidence: experimental ; Illumina [1]

Mature oan-miR-29b-3p

• Accession: MIMAT0006809
• Description: Ornithorhynchus anatinus oan-miR-29b-3p mature miRNA
• Sequence: 76 - UAGCACCAUUUGAAAUCAGUGU - 97
• Evidence: not_experimental

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004