Stem-loop oan-mir-130c

Accession

MI0006726

Description

Ornithorhynchus anatinus oan-mir-130c precursor miRNA

Gene family

MIPF0000034; mir-130

Sequence

4692 reads, 110 reads per million, 5 experiments

ggauggccgccggccggaGCCCUUUUGCCGUUGUGCUACugagcgugaggagCAGUGCAAUGGUAAAAGGGCAUcggcuggcggggucc
((((..(((((((((((.(((((((((((((((((((.((..........)).))))))))))))))))))).))))))))))).))))

Structure

    gg           a                   A  gagc 
ggau  ccgccggccgg GCCCUUUUGCCGUUGUGCU Cu    g
||||  ||||||||||| ||||||||||||||||||| ||     
ccug  ggcggucggcU CGGGAAAAUGGUAACGUGA ga    u
    -g           A                   C  ggag 

Annotation confidence Not enough data

Genome context

Contig144273: 600-688 [+]

Mature oan-miR-130c-5p

• Accession: MIMAT0006907
• Description: Ornithorhynchus anatinus oan-miR-130c-5p mature miRNA
• Sequence: 19 - GCCCUUUUGCCGUUGUGCUAC - 39
• Evidence: experimental ; Illumina [1]

Mature oan-miR-130c-3p

• Accession: MIMAT0006908
• Description: Ornithorhynchus anatinus oan-miR-130c-3p mature miRNA
• Sequence: 53 - CAGUGCAAUGGUAAAAGGGCAU - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004