miRBase entry: oan-mir-27a

Stem-loop oan-mir-27a


Accession
MI0006825
Description
Ornithorhynchus anatinus oan-mir-27a precursor miRNA


Sequence

67769 reads, 895 reads per million, 5 experiments
gguccggcggagcAGGGCUUAGCUGGCCUGUGAACAguuaguucccugcgugUUCACAGUGGCUAAGUUCCGCcccuccagggcc
(((((((.((.((.((((((((((...(((((((((..(((....)))..))))))))).)))))))))).)).)).)).)))))

Structure
     -  c  a  A          GGC         gu   u 
ggucc gg gg gc GGGCUUAGCU   CUGUGAACA  uag u
||||| || || || ||||||||||   |||||||||  |||  
ccggg cc cc CG CUUGAAUCGG   GACACUUgu  guc c
     a  u  c  C          --U         gc   c 


Annotation confidence High
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Genome context
Contig6812: 3490-3574 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from oan-mir-27a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-27a-5p

Accession MIMAT0007062
Description Ornithorhynchus anatinus oan-miR-27a-5p mature miRNA
Sequence 14 - AGGGCUUAGCUGGCCUGUGAACA - 36
Evidence experimental
Illumina [1]

Mature oan-miR-27a-3p

Accession MIMAT0007063
Description Ornithorhynchus anatinus oan-miR-27a-3p mature miRNA
Sequence 53 - UUCACAGUGGCUAAGUUCCGC - 73
Evidence experimental
Illumina [1]
Database links

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004