Stem-loop oan-mir-10a

Accession

MI0006859

Description

Ornithorhynchus anatinus oan-mir-10a precursor miRNA

Sequence

252254 reads, 5731 reads per million, 5 experiments

aaagaagauaugucugucuucuguauaUACCCUGUAGAUCCGAAUUUGUguaaggaguuucguggucaCAAAUUCGUAUCUAGGGGAAUauguaguugacauaaacacuccggucauuuuuu
(((((((((.(((.((((..((((((((.((((.(((((.((((((((((..(.((...)).)...)))))))))).))))))))).))))))))..))))...))).....))).))))))

Structure

      -   ----a   --c    uu        A    G     C          -ua g  g 
aaagaa gau     ugu   uguc  cuguauaU CCCU UAGAU CGAAUUUGUg   a ga  
|||||| |||     |||   ||||  |||||||| |||| ||||| ||||||||||   | || u
uuuuuu cug     aca   acag  gauguaUA GGGG AUCUA GCUUAAACac   u cu  
      a   gccuc   aau    uu        A    -     U          ugg g  u 

Annotation confidence High

Genome context

Contig81155: 820-941 [+]

Mature oan-miR-10a-5p

• Accession: MIMAT0007122
• Description: Ornithorhynchus anatinus oan-miR-10a-5p mature miRNA
• Sequence: 28 - UACCCUGUAGAUCCGAAUUUGU - 49
• Evidence: experimental ; Illumina [1]

Mature oan-miR-10a-3p

• Accession: MIMAT0007123
• Description: Ornithorhynchus anatinus oan-miR-10a-3p mature miRNA
• Sequence: 69 - CAAAUUCGUAUCUAGGGGAAU - 89
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004