Stem-loop cin-mir-92a

Accession

MI0007160

Description

Ciona intestinalis cin-mir-92a precursor miRNA

Literature search

1 open access papers mention cin-mir-92a
(1 sentences)

Sequence

868 reads, 362 reads per million, 2 experiments

gaagcuuuagugaaguuugauuauauauuacucgaCGGCUGGUACAAGAGCACGAucgauuaggaUAUUGCACUUGUCCCGGUCUUagggugguauaaaaa
.(((((((...))))))).....((((((((((...((((((.(((((.(((..(((......)))..))).))))).))))))...))))))))))....

Structure

gaagcuuuagugaaguuugauua          gaC      U     A   CG   ga 
                       uauauuacuc   GGCUGG ACAAG GCA  Auc  u
                       ||||||||||   |||||| ||||| |||  |||   
                       auaugguggg   CUGGCC UGUUC CGU  Uag  u
-------------------aaaa          aUU      C     A   UA   ga 

Annotation confidence High

Comments

Norden-Krichmar et al refer to this sequence as mir-25 [1].

Genome context

3p: 1864426-1864526 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cin-mir-92a

Mature cin-miR-92a-5p

• Accession: MIMAT0015253
• Description: Ciona intestinalis cin-miR-92a-5p mature miRNA
• Sequence: 36 - CGGCUGGUACAAGAGCACGA - 55
• Evidence: experimental ; Illumina [3]

Mature cin-miR-92a-3p

• Accession: MIMAT0006096
• Description: Ciona intestinalis cin-miR-92a-3p mature miRNA
• Sequence: 66 - UAUUGCACUUGUCCCGGUCUU - 86
• Evidence: experimental ; Northern [1], Illumina [3]

References

1. PubMed ID: 18339653
   Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
   "Fu X, Adamski M, Thompson EM"
   "Mol Biol Evol (2008) 25:1067-1080


2. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39


3. PubMed ID: 18047675
   Computational prediction and experimental validation of Ciona intestinalis microRNA genes
   Norden-Krichmar TM, Holtz J, Pasquinelli AE, Gaasterland T
   BMC Genomics (2007) 8:445