Stem-loop gga-mir-130c

Accession

MI0007560

Description

Gallus gallus gga-mir-130c precursor miRNA

Literature search

4 open access papers mention gga-mir-130c
(6 sentences)

Sequence

39745 reads, 562 reads per million, 5 experiments

uugagcggugucuguccagcGCCCUUUUUAUGUUGUACUACUagugaucauacacaaagCAGUGCAAUGUUAAAAGGGCAUuggccagcagugc
....(((.((.(((.((((.((((((((.((((((((((.((.(((......)))..)).)))))))))).)))))))).)))).))))).)))

Structure

uuga   g  u   u    c        U          A  -a   au 
    gcg ug cug ccag GCCCUUUU AUGUUGUACU CU  gug  c
    ||| || ||| |||| |||||||| |||||||||| ||  |||   
    cgu ac gac gguU CGGGAAAA UGUAACGUGA ga  cac  a
----   g  -   c    A        U          C  aa   au 

Annotation confidence Not enough data

Genome context

chr19: 7202980-7203073 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-130c

Mature gga-miR-130c-5p

• Accession: MIMAT0007733
• Description: Gallus gallus gga-miR-130c-5p mature miRNA
• Sequence: 21 - GCCCUUUUUAUGUUGUACUACU - 42
• Evidence: experimental ; Illumina [1]

Mature gga-miR-130c-3p

• Accession: MIMAT0007734
• Description: Gallus gallus gga-miR-130c-3p mature miRNA
• Sequence: 60 - CAGUGCAAUGUUAAAAGGGCAU - 81
• Evidence: experimental ; Illumina [1], cloned [2], Northern [2]

References

1. PubMed ID: 18511220
   Identification of novel chicken microRNAs and analysis of their genomic organization
   "Shao P, Zhou H, Xiao ZD, He JH, Huang MB, Chen YQ, Qu LH"
   "Gene (2008) 418:34-40


2. PubMed ID: 18469162
   A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
   "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
   "Genome Res (2008) 18:957-964