Stem-loop gga-mir-458a

Accession

MI0007567

Description

Gallus gallus gga-mir-458a precursor miRNA mir-458

Gene
family

RF00750; mir-458

Literature search

2 open access papers mention gga-mir-458a
(2 sentences)

Sequence

132852 reads, 1548 reads per million, 5 experiments

agcagagccgcggccguggugcagauggcAGCGCCAUUUUCAGAGCUAUAaacagcgucauugucAUAGCUCUUUGAAUGGUACUGCcauauguacuggaaaaacagcaucuaugc
.(((.((..((..((..((((((.(((((((.(((((((..((((((((..((((.....)))).))))))))..))))))).))))))).)))))))).......))..)).)))

Structure

a   g  cc  -----gg  gu      g       C       UC        Aa    c 
 gca ag  gc       cc  ggugca auggcAG GCCAUUU  AGAGCUAU  acag g
 ||| ||  ||       ||  |||||| ||||||| |||||||  ||||||||  |||| u
 cgu uc  cg       gg  ucaugu uacCGUC UGGUAAG  UCUCGAUA  uguu c
-   a  ua  acaaaaa  --      a       A       UU        -c    a 

Annotation confidence Not enough data

Genome context

chr13: 8233311-8233426 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gga-mir-458a

Mature gga-miR-458a-5p

• Accession: MIMAT0007745
• Description: Gallus gallus gga-miR-458a-5p mature miRNA
• Sequence: 30 - AGCGCCAUUUUCAGAGCUAUA - 50
• Evidence: experimental ; Illumina [1]

Mature gga-miR-458a-3p

• Accession: MIMAT0007746
• Description: Gallus gallus gga-miR-458a-3p mature miRNA
• Sequence: 66 - AUAGCUCUUUGAAUGGUACUGC - 87
• Evidence: not_experimental

References

1. PubMed ID: 18511220
   Identification of novel chicken microRNAs and analysis of their genomic organization
   "Shao P, Zhou H, Xiao ZD, He JH, Huang MB, Chen YQ, Qu LH"
   "Gene (2008) 418:34-40


2. PubMed ID: 18469162
   A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
   "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
   "Genome Res (2008) 18:957-964