miRBase entry: cfa-mir-30c-1

Stem-loop cfa-mir-30c-1

Accession

MI0008024

Description

Canis familiaris cfa-mir-30c-1 precursor miRNA

Sequence

UGUAAACAUCCUACACUCUCAGCUgugagcucaagguggcugggagaggguuguuuacucc
.(((((((.(((...(((((((((....(((...)))))))))))).))).)))))))...

Structure

--U       U   ACA         guga   c 
   GUAAACA CCU   CUCUCAGCU    gcu  
   ||||||| |||   |||||||||    ||| a
   cauuugu ggg   gagggucgg    ugg  
ccu       u   --a         ----   a

Annotation confidence Not enough data

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Genome context

chr15: 2280050-2280110 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-30c-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cfa-miR-30c

Accession	MIMAT0006605
Description	Canis familiaris cfa-miR-30c mature miRNA
Sequence	1 - UGUAAACAUCCUACACUCUCAGCU - 24
Evidence	experimental Illumina [1]

References

PubMed ID: 18392026
Discovering microRNAs from deep sequencing data using miRDeep
"Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
"Nat Biotechnol (2008) 26:407-415