miRBase entry: cfa-mir-25

Stem-loop cfa-mir-25

Accession

MI0008111

Description

Canis familiaris cfa-mir-25 precursor miRNA

Sequence

aggcggagacuugggcaauugcuggacgcugcccgcgCAUUGCACUUGUCUCGGUCUGA
((((.(((((..(.((((((((.((......)).))).))))).)..))))).))))..

Structure

--    g     uu g     -   u  ac 
  aggc gagac  g gcaau ugc gg  g
  |||| |||||  | ||||| ||| ||   
  UCUG CUCUG  C CGUUA gcg cc  c
AG    G     UU A     C   c  gu

Annotation confidence Not enough data

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Genome context

chr6: 9498993-9499051 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cfa-mir-25

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cfa-miR-25

Accession	MIMAT0006697
Description	Canis familiaris cfa-miR-25 mature miRNA
Sequence	38 - CAUUGCACUUGUCUCGGUCUGA - 59
Evidence	experimental Illumina [1]

References

PubMed ID: 18392026
Discovering microRNAs from deep sequencing data using miRDeep
"Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
"Nat Biotechnol (2008) 26:407-415