miRBase entry: cfa-mir-193b

Stem-loop cfa-mir-193b

Accession

MI0008113

Description

Canis familiaris cfa-mir-193b precursor miRNA

Sequence

CGGGGUUUUGAGGGCGAGAUGAguuuauguuugauccaacuggcccacaaagucccgcu
((((((((((.((((.((.((.(.(((....))).))).)).)))).))))))))))..

Structure

--          A    G  A  A u   u 
  CGGGGUUUUG GGGC AG UG g uua g
  |||||||||| |||| || || | |||  
  gcccugaaac cccg uc ac c agu u
uc          a    g  a  - u   u

Annotation confidence Not enough data

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Genome context

chr6: 28878050-28878108 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-193b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cfa-miR-193b

Accession	MIMAT0006699
Description	Canis familiaris cfa-miR-193b mature miRNA
Sequence	1 - CGGGGUUUUGAGGGCGAGAUGA - 22
Evidence	experimental Illumina [1]

References

PubMed ID: 18392026
Discovering microRNAs from deep sequencing data using miRDeep
"Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
"Nat Biotechnol (2008) 26:407-415