miRBase entry: cfa-mir-493

Stem-loop cfa-mir-493

Accession

MI0008130

Description

Canis familiaris cfa-mir-493 precursor miRNA

Sequence

uguacaugguaggcuuucauucauucguuugcacauucggUGAAGGUCUACUGUGUGCCAG
.((((((((((((((((((((.................))))))))))))))))))))...

Structure

--u                    cauucgu 
   guacaugguaggcuuucauu       u
   ||||||||||||||||||||       u
   CGUGUGUCAUCUGGAAGUgg       g
GAC                    cuuacac

Annotation confidence Not enough data

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Genome context

chr8: 69094352-69094412 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cfa-mir-493

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cfa-miR-493

Accession	MIMAT0006711
Description	Canis familiaris cfa-miR-493 mature miRNA
Sequence	41 - UGAAGGUCUACUGUGUGCCAG - 61
Evidence	experimental Illumina [1]

References

PubMed ID: 18392026
Discovering microRNAs from deep sequencing data using miRDeep
"Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
"Nat Biotechnol (2008) 26:407-415