miRBase entry: cfa-mir-542

Stem-loop cfa-mir-542

Accession

MI0008171

Description

Canis familiaris cfa-mir-542 precursor miRNA

Sequence

ucggggaucaucaugucacgagauaccacugugcacuUGUGACAGAUUGAUAACUGAAA
((((..((((...(((((((((.(((....)))..)))))))))...))))..))))..

Structure

--    gg    uca         -a   c 
  ucgg  auca   ugucacgag  uac a
  ||||  ||||   |||||||||  |||  
  AGUC  UAGU   ACAGUGUuc  gug c
AA    AA    UAG         ac   u

Annotation confidence Not enough data

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Genome context

chrX: 105178359-105178417 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from cfa-mir-542

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cfa-miR-542

Accession	MIMAT0006747
Description	Canis familiaris cfa-miR-542 mature miRNA
Sequence	38 - UGUGACAGAUUGAUAACUGAAA - 59
Evidence	experimental Illumina [1]

References

PubMed ID: 18392026
Discovering microRNAs from deep sequencing data using miRDeep
"Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
"Nat Biotechnol (2008) 26:407-415