miRBase entry: osa-MIR1861k

Stem-loop osa-MIR1861k


Accession
MI0008257
Description
Oryza sativa osa-MIR1861k precursor miRNA
Gene family
MIPF0000567; MIR1861

Literature search
8 open access papers mention osa-MIR1861k
(48 sentences)

Sequence

9 reads, 9 reads per million, 2 experiments
gcauauucuuaggccCGGUCUUGUGGCAAGAACUGAGuaguucguuaacucgcuacgcgguucuugucacaagaccgagucugugaauaugc
((((((((.(((((.((((((((((((((((((((.(((((..........))))).)))))))))))))))))))).))))).))))))))

Structure
        u     c                    A     ucgu 
gcauauuc uaggc CGGUCUUGUGGCAAGAACUG Guagu    u
|||||||| ||||| |||||||||||||||||||| |||||     
cguauaag gucug gccagaacacuguucuuggc caucg    a
        u     a                    g     cuca 


Annotation confidence Not enough data
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Genome context
Chr8: 15132529-15132620 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from osa-MIR1861k
Name Accession Chromosome Start End Strand Confidence




Database links

Mature osa-miR1861k

Accession MIMAT0007806
Description Oryza sativa osa-miR1861k mature miRNA
Sequence 16 - CGGUCUUGUGGCAAGAACUGAG - 37
Evidence experimental
454 [1]
Database links

References

  1. PubMed ID: 18687877
    A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
    "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
    "Genome Res (2008) 18:1456-1465