Stem-loop tca-mir-1

Accession

MI0008892

Description

Tribolium castaneum tca-mir-1 precursor miRNA

Literature search

1 open access papers mention tca-mir-1
(2 sentences)

Sequence

uucgcgaguuCCGUGCUUCCUUACUUCCCAUAgugcuuuaaacguaUGGAAUGUAAAGAAGUAUGGAGcgaa
.((((....((((((((((.((((...(((((((.......)).)))))...)))).)))))))))))))).

Structure

u    gagu          C    UUC     -  gc 
 ucgc    uCCGUGCUUC UUAC   CCAUA gu  u
 ||||    |||||||||| ||||   ||||| ||  u
 agcG    AGGUAUGAAG AAUG   GGUau ca  u
a    ----          A    UAA     g  aa 

Annotation confidence Not enough data

Genome context

ChLG5: 10252845-10252916 [-]

Mature tca-miR-1-3p

• Accession: MIMAT0008352
• Description: Tribolium castaneum tca-miR-1-3p mature miRNA
• Sequence: 47 - UGGAAUGUAAAGAAGUAUGGAG - 68
• Evidence: experimental ; SOLID [2]

Mature tca-miR-1-5p

• Accession: MIMAT0019092
• Description: Tribolium castaneum tca-miR-1-5p mature miRNA
• Sequence: 11 - CCGUGCUUCCUUACUUCCCAUA - 32
• Evidence: experimental ; SOLID [2]

References

1. PubMed ID: 18651924
   In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)
   "Singh J, Nagaraju J"
   "Insect Mol Biol (2008) 17:427-436


2. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696