Stem-loop tca-mir-317

Accession

MI0008930

Description

Tribolium castaneum tca-mir-317 precursor miRNA

Literature search

1 open access papers mention tca-mir-317
(2 sentences)

Sequence

ggcggugcUGGGGACCACCCUGUGUUuacucuguauuucgaccagUGAACACAGCUGGUGGUAUCUCAGUuucuucc
((.((.((((((((((((((((((((((((..((......)).)))))))))))..)))))).)))))))..)).))

Structure

  c  -u       -      --           cu  au 
gg gg  gcUGGGG ACCACC  CUGUGUUuacu  gu  u
|| ||  ||||||| ||||||  |||||||||||  ||   
cc uc  UGACUCU UGGUGG  GACACAAGUga  ca  u
  u  uu       A      UC           -c  gc 

Annotation confidence Not enough data

Genome context

ChLG7: 13750590-13750666 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from tca-mir-317

Mature tca-miR-317-3p

• Accession: MIMAT0008390
• Description: Tribolium castaneum tca-miR-317-3p mature miRNA
• Sequence: 46 - UGAACACAGCUGGUGGUAUCUCAGU - 70
• Evidence: experimental ; SOLID [2]

Mature tca-miR-317-5p

• Accession: MIMAT0019130
• Description: Tribolium castaneum tca-miR-317-5p mature miRNA
• Sequence: 9 - UGGGGACCACCCUGUGUU - 26
• Evidence: experimental ; SOLID [2]

References

1. PubMed ID: 18651924
   In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)
   "Singh J, Nagaraju J"
   "Insect Mol Biol (2008) 17:427-436


2. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696