miRBase entry: dmo-mir-5

Stem-loop dmo-mir-5

Accession

MI0009245

Description

Drosophila mojavensis dmo-mir-5 precursor miRNA

Sequence

gcuaAAAGGAACGAUCGUUGUGAUAUGcguuaaucgaccguuacauaucacagugauuuuccuuuauagcgc
(((((((((((.(((((((((((((((...((((.....)))))))))))))))))))))))))).))))..

Structure

--    -       C               cgu    c 
  gcua AAAGGAA GAUCGUUGUGAUAUG   uaau g
  |||| ||||||| |||||||||||||||   |||| a
  cgau uuuccuu uuagugacacuauac   auug c
cg    a       -               ---    c

Annotation confidence Not enough data

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Genome context

scaffold_6496: 20936464-20936535 [-]

Clustered miRNAs

7 other miRNAs are < 10 kb from dmo-mir-5

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dmo-miR-5

Accession	MIMAT0008691
Description	Drosophila mojavensis dmo-miR-5 mature miRNA
Sequence	5 - AAAGGAACGAUCGUUGUGAUAUG - 27
Evidence	not_experimental

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218