Stem-loop pta-MIR1309

Accession

MI0009706

Description

Pinus taeda pta-MIR1309 precursor miRNA

Sequence

uccaguuggacagagcuacaguuggaucagauuUGAUGGCCCUUUUGAAGGACAaaaagccuccacuuccguauguuuaucacccaccccagcguccaucgauuaugugauuuggucagcuuccucuacgggcuuucguucagagcaaauucaagaugaagagaacuccugugaaaccgggauucauguacauugaugaacuccugugaaaccuggguuuaucaugauagcaugaaaacuuagggaggauugaacuaugcagugucguuugagugggguuucauuuuaucuuguauaaaaaaagaaaugccuucuggagc
(((((..((.((((...(((..((((..((...((..(((..((((........)))))))..))))))))..)))...))....((((((.(.((...((((..((((...(((((((..(((((((((((..(((.((((..............))))..)))..))))))....((((((((((........))))).))))).....(((((((((.(((((....)))))))))))))))))))))).))))))))..))))...))))))))).........((((.........))))..))))..)))))..

Structure

--     uu  a  ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------  gcu   gu    uc  auu  AU   CC    GAA 
  uccag  gg ca                                                                                                                                                                                                                                  ga   aca  ugga  ag   UG  GGC  UUUU   G
  |||||  || ||                                                                                                                                                                                                                                  ||   |||  ||||  ||   ||  |||  ||||    
  agguc  cc gu                                                                                                                                                                                                                                  cu   ugu  gccu  uc   ac  ccg  aaaa   G
cg     uu  -  aaagaaaaaaauauguucuauuuuacuuuggggugaguuugcugugacguaucaaguuaggagggauucaaaaguacgauaguacuauuuggguccaaaguguccucaaguaguuacauguacuuagggccaaaguguccucaagagaaguagaacuuaaacgagacuugcuuucgggcaucuccuucgacugguuuaguguauuagcuaccugcgaccccaccca  auu   au    --  ---  cu   --    ACA 

Annotation confidence Not enough data

Genome context

Unknown

Mature pta-miR1309

• Accession: MIMAT0009126
• Description: Pinus taeda pta-miR1309 mature miRNA
• Sequence: 34 - UGAUGGCCCUUUUGAAGGACA - 54
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18323537
   Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa
   "Morin RD, Aksay G, Dolgosheina E, Ebhardt HA, Magrini V, Mardis ER, Sahinalp SC, Unrau PJ"
   "Genome Res (2008) 18:571-584