Stem-loop bfl-mir-100

Accession

MI0010025

Description

Branchiostoma floridae bfl-mir-100 precursor miRNA

Sequence

agauaaagccggcugccauaAACCCGUAGAUCCGAACUUGUGUugcuucaguucaCAAGCUCGUGUCUAUGGGUCUaugucaucagggcaacaucugcac
((((...(((.(.((.((((.((((((((((.(((.((((((..((....)).)))))).))).)))))))))).)))).)).)..)))...))))....

Structure

----    aaa   -g c  c    A          C   A      Uu  u 
    agau   gcc  g ug caua ACCCGUAGAU CGA CUUGUG  gc u
    ||||   |||  | || |||| |||||||||| ||| ||||||  ||  
    ucua   cgg  c ac guaU UGGGUAUCUG GCU GAACac  ug c
cacg    caa   ga u  u    C          U   C      -u  a 

Annotation confidence Not enough data

Genome context

GG666478.1: 2705733-2705832 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from bfl-mir-100

Mature bfl-miR-100-5p

• Accession: MIMAT0009481
• Description: Branchiostoma floridae bfl-miR-100-5p mature miRNA
• Sequence: 21 - AACCCGUAGAUCCGAACUUGUGU - 43
• Evidence: experimental ; 454 [1]

Mature bfl-miR-100-3p

• Accession: MIMAT0019145
• Description: Branchiostoma floridae bfl-miR-100-3p mature miRNA
• Sequence: 56 - CAAGCUCGUGUCUAUGGGUCU - 76
• Evidence: experimental ; 454 [2]

References

1. PubMed ID: 19196333
   The deep evolution of metazoan microRNAs
   "Wheeler BM, Heimberg AM, Moy VN, Sperling EA, Holstein TW, Heber S, Peterson KJ"
   "Evol Dev (2009) 11:50-68


2. PubMed ID: 21210939
   microRNA complements in deuterostomes: origin and evolution of microRNAs
   "Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M"
   "Evol Dev (2011) 13:15-27