Stem-loop nve-mir-2043-1

Accession

MI0010311

Description

Nematostella vectensis nve-mir-2043-1 precursor miRNA

Sequence

918 reads, 2101 reads per million, 20 experiments

guaucugauaucgaaucucuUAUAUCGCCUUUUGAGGUUAUUuucuuaaUACCCUCAAAAGACGGUAUUAGagauuacacagcuggaca
((..(((......(((((((.((((((.(((((((((.((((.....)))).))))))))).)))))).)))))))...)))....)).

Structure

-  --au   auaucg       U      C         U    u 
 gu    cug      aaucucu AUAUCG CUUUUGAGG UAUU u
 ||    |||      ||||||| |||||| ||||||||| |||| c
 ca    gac      uuagaGA UAUGGC GAAAACUCC AUaa u
a  gguc   ---aca       U      A         C    u 

Annotation confidence High

Genome context

scaffold_14: 1324936-1325024 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from nve-mir-2043-1

Mature nve-miR-2043-5p

• Accession: MIMAT0009810
• Description: Nematostella vectensis nve-miR-2043-5p mature miRNA
• Sequence: 21 - UAUAUCGCCUUUUGAGGUUAUU - 42
• Evidence: experimental ; 454 [1], Illumina [2]

Mature nve-miR-2043-3p

• Accession: MIMAT0009811
• Description: Nematostella vectensis nve-miR-2043-3p mature miRNA
• Sequence: 50 - UACCCUCAAAAGACGGUAUUAG - 71
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 18830242
   Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals
   "Grimson A, Srivastava M, Fahey B, Woodcroft BJ, Chiang HR, King N, Degnan BM, Rokhsar DS, Bartel DP"
   "Nature (2008) 455:1193-1197


2. PubMed ID: 24642861
   Cnidarian microRNAs frequently regulate targets by cleavage
   "Moran Y, Fredman D, Praher D, Li XZ, Wee LM, Rentzsch F, Zamore PD, Technau U, Seitz H"
   "Genome Res (2014) 24:651-663