miRBase entry: cfa-mir-188

Stem-loop cfa-mir-188

Accession

MI0010379

Description

Canis familiaris cfa-mir-188 precursor miRNA

Sequence

ugcucccucucucaCAUCCCUUGCAUGGUGGAGGGUgagcuuuuugaaaaccccucccacaugcaggguuugcaggauggugagcc
.((((((..(((..((..(((((((((..((((((....(.....).....))))))..)))))))))..))..))).)).)))).

Structure

u    -  uc   ca  UC         GU      -Ugag u 
 gcuc cc  ucu  CA  CCUUGCAUG  GGAGGG     c u
 |||| ||  |||  ||  |||||||||  ||||||     | u
 cgag gg  agg  gu  gggacguac  ccuccc     g u
c    u  -u   ac  uu         ac      caaaa u

Annotation confidence Not enough data

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Genome context

chrX: 42775058-42775143 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from cfa-mir-188

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cfa-miR-188

Accession	MIMAT0009880
Description	Canis familiaris cfa-miR-188 mature miRNA
Sequence	15 - CAUCCCUUGCAUGGUGGAGGGU - 36
Evidence	not_experimental

References

PubMed ID: 18215311
miRNAminer: a tool for homologous microRNA gene search
"Artzi S, Kiezun A, Shomron N"
"BMC Bioinformatics (2008) 9:39