Stem-loop cbr-mir-41b

Accession

MI0011006

Description

Caenorhabditis briggsae cbr-mir-41b precursor miRNA

Gene family

MIPF0000096; mir-36

Sequence

gcggaucucucuggccuuggagguuucucaucguagugauacaaaaccaaaaccauacgauaUCACCGGGUGAGAAUCUUCCaagguaggaggauccugc
(((((((.((((.((((((((((.((((((((...((((((...................))))))..)))))))).)))))))))).))))))))).))

Structure

  -     u    g          u        gua      caaaacca 
gc ggauc cucu gccuuggagg uucucauc   gugaua        a
|| ||||| |||| |||||||||| ||||||||   ||||||        a
cg ccuag gagg uggaaCCUUC AAGAGUGG   CACUau        a
  u     -    a          U        -GC      agcauacc 

Annotation confidence Not enough data

Genome context

chrII: 8378050-8378149 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from cbr-mir-41b

Mature cbr-miR-41b

• Accession: MIMAT0011489
• Description: Caenorhabditis briggsae cbr-miR-41b mature miRNA
• Sequence: 63 - UCACCGGGUGAGAAUCUUCC - 82
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074