Stem-loop cbr-mir-2226

Accession

MI0011016

Description

Caenorhabditis briggsae cbr-mir-2226 precursor miRNA

Sequence

ggcuagacaugccugcAAUGACACAGAAGAACUGGCAAUGaaaccaauacuacuuauuucAUUACGGUCUGUGUGCCAUAGCuggcgugucucuagcca
(((((((((((((.((.(((.((((..(((.(((..(((((((.............))))))).)))))).)))).))).)).)))))))))..)))).

Structure

-    --         u  A   A    GA   A   GC       ccaau 
 ggcu  agacaugcc gc AUG CACA  AGA CUG  AAUGaaa     a
 ||||  ||||||||| || ||| ||||  ||| |||  |||||||     c
 ccga  ucugugcgg CG UAC GUGU  UCU GGC  UUAcuuu     u
a    uc         u  A   C    -G   -   -A       auuca 

Annotation confidence Not enough data

Genome context

chrIII: 869446-869544 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from cbr-mir-2226

Mature cbr-miR-2226-5p

• Accession: MIMAT0011499
• Description: Caenorhabditis briggsae cbr-miR-2226-5p mature miRNA
• Sequence: 17 - AAUGACACAGAAGAACUGGCAAUG - 40
• Evidence: experimental ; 454 [1]

Mature cbr-miR-2226-3p

• Accession: MIMAT0011500
• Description: Caenorhabditis briggsae cbr-miR-2226-3p mature miRNA
• Sequence: 61 - AUUACGGUCUGUGUGCCAUAGC - 82
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074