miRBase entry: crm-mir-35g

Stem-loop crm-mir-35g

Accession

MI0011101

Description

Caenorhabditis remanei crm-mir-35g precursor miRNA

Gene family

MIPF0000096; mir-36

Sequence

auugcacuugacgacgggaaccgugcugauguugaccucggugauaggacugaaccguuacaagcuaUCACCGGGUGAACAUUGGUACUggucccuuagucaugauauugcgau
(((((((.((((...((((.(((((((((((((.(((.(((((((((.................)))))))))))).))))))))))).))))))...)))).)....))))))

Structure

      ---- u    gac    a  -           g   u         gacugaa 
auugca    c ugac   ggga cc gugcugauguu acc cggugauag       c
||||||    | ||||   |||| || ||||||||||| ||| |||||||||       c
uagcgu    g acug   cccu gg CAUGGUUACAA UGG GCCACUauc       g
      uaua u    auu    -  U           G   -         gaacauu

Annotation confidence Not enough data

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Genome context

Crem_Contig93: 222433-222546 [-]

Clustered miRNAs

15 other miRNAs are < 10 kb from crm-mir-35g

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature crm-miR-35g

Accession	MIMAT0011605
Description	Caenorhabditis remanei crm-miR-35g mature miRNA
Sequence	68 - UCACCGGGUGAACAUUGGUACU - 89
Evidence	experimental 454 [1]

References

PubMed ID: 19755563
Repertoire and evolution of miRNA genes in four divergent nematode species
"de Wit E, Linsen SE, Cuppen E, Berezikov E"
"Genome Res (2009) 19:2064-2074