Stem-loop crm-mir-64a

Accession

MI0011124

Description

Caenorhabditis remanei crm-mir-64a precursor miRNA

Literature search

1 open access papers mention crm-mir-64a
(20 sentences)

Sequence

cagaaggccucgccgaaUAUGACACUGUUGCGUAGCAUGaccaaugagacucuacaaaagagugaauggaucUGACUACGCUCAGUGGAAUACCcggcgagugccuucu
.((((((((((((((..(((..(((((..((((((((.(((((.....(((((.....)))))...))).)))).)))))).)))))..)))..))))))).)))))))

Structure

c       -       aa   GA     UU      -  U  -   augag     a 
 agaaggc cucgccg  UAU  CACUG  GCGUAG CA Ga cca     acucu c
 ||||||| |||||||  |||  |||||  |||||| || || |||     ||||| a
 ucuuccg gagcggc  AUA  GUGAC  CGCAUC GU cu ggu     ugaga a
-       u       CC   AG     -U      A  -  a   --aag     a 

Annotation confidence Not enough data

Genome context

Crem_Contig41: 71965-72073 [+]

Clustered miRNAs

6 other miRNAs are < 10 kb from crm-mir-64a

Mature crm-miR-64a-5p

• Accession: MIMAT0011633
• Description: Caenorhabditis remanei crm-miR-64a-5p mature miRNA
• Sequence: 18 - UAUGACACUGUUGCGUAGCAUG - 39
• Evidence: experimental ; 454 [1]

Mature crm-miR-64a-3p

• Accession: MIMAT0011634
• Description: Caenorhabditis remanei crm-miR-64a-3p mature miRNA
• Sequence: 73 - UGACUACGCUCAGUGGAAUACC - 94
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074