Stem-loop ppc-mir-2232-1

Accession

MI0011131

Description

Pristionchus pacificus ppc-mir-2232-1 precursor miRNA

Gene family

MIPF0001054; mir-2232

Sequence

cugagagacccauccgauccugaacgguucccugguggcauggucgauacuaaugagcgaacUAUGACACCUGGGCGAACUGUCCaggcgggguuuccaa
.((.(((((((...((..((((.((((((((((((((.((((((((...........)).)))))).)))).))).))))))).))))))))))))))).

Structure

c  a       auc  au    a       -   -    g      -  auac 
 ug gagaccc   cg  ccug acgguuc ccu ggug cauggu cg    u
 || |||||||   ||  |||| ||||||| ||| |||| |||||| ||    a
 ac cuuuggg   gc  ggaC UGUCAAG GGG CCAC GUAUca gc    a
a  -       ---  --    C       C   U    A      a  gagu 

Annotation confidence Not enough data

Genome context

ABKE03000119.1: 562163-562262 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppc-mir-2232-1

Mature ppc-miR-2232

• Accession: MIMAT0011643
• Description: Pristionchus pacificus ppc-miR-2232 mature miRNA
• Sequence: 63 - UAUGACACCUGGGCGAACUGUCC - 85
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 19755563
   Repertoire and evolution of miRNA genes in four divergent nematode species
   "de Wit E, Linsen SE, Cuppen E, Berezikov E"
   "Genome Res (2009) 19:2064-2074