Stem-loop bmo-mir-279d

Accession

MI0012297

Description

Bombyx mori bmo-mir-279d precursor miRNA

Literature search

8 open access papers mention bmo-mir-279d
(13 sentences)

Sequence

594 reads, 110 reads per million, 3 experiments

uuccucagacGAUGAGUGACCGUUUAGUUCAAguugucaauucuUGACUAGAUUUUCACUUAUCCUcugcgggcac
.(((.((((.(((((((((..(((((((.((((.........)))))))))))..))))))))).)))).)))...

Structure

--u   u    c         CC       U    uug 
   ucc caga GAUGAGUGA  GUUUAGU CAAg   u
   ||| |||| |||||||||  ||||||| ||||   c
   ggg gucU CUAUUCACU  UAGAUCA GUuc   a
cac   c    C         UU       -    uua 

Annotation confidence Not enough data

Genome context

NW_004582019.1: 739120-739195 [+]

Mature bmo-miR-279d-5p

• Accession: MIMAT0013606
• Description: Bombyx mori bmo-miR-279d-5p mature miRNA
• Sequence: 11 - GAUGAGUGACCGUUUAGUUCAA - 32
• Evidence: experimental ; Illumina [1], SOLID [2]

Mature bmo-miR-279d-3p

• Accession: MIMAT0013607
• Description: Bombyx mori bmo-miR-279d-3p mature miRNA
• Sequence: 45 - UGACUAGAUUUUCACUUAUCCU - 66
• Evidence: experimental ; Illumina [1], SOLID [2]

References

1. PubMed ID: 20199675
   MicroRNAs of Bombyx mori identified by Solexa sequencing
   Liu S, Li D, Li Q, Zhao P, Xiang Z, Xia Q
   BMC Genomics (2010) 11:148


2. PubMed ID: 20229201
   Novel microRNAs in silkworm (Bombyx mori)
   "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
   "Funct Integr Genomics (2010) 10:405-415