Stem-loop rno-mir-295-1

Accession

MI0012611

Description

Rattus norvegicus rno-mir-295-1 precursor miRNA

Literature search

3 open access papers mention rno-mir-295-1
(8 sentences)

Sequence

197 reads, 7 reads per million, 45 experiments

cauuuuggugagACUCAAAUGUGGGGCACACUUCUggauuaugcguagaAAGUGCUACUACUUUUGGGUGUcuccuguggg
(((...((.((.(((((((.(((((((((..(((((.........))))).))))).)))).))))))).)).)).)))..

Structure

--   uuu  u  g       U    -     AC     gau 
  cau   gg ga ACUCAAA GUGG GGCAC  UUCUg   u
  |||   || || ||||||| |||| |||||  |||||   a
  gug   cc cU UGGGUUU CAUC UCGUG  Aagau   u
gg   --u  u  G       U    A     -A     gcg 

Annotation confidence Not enough data

Genome context

chr1: 64536623-64536703 [-]

Clustered miRNAs

6 other miRNAs are < 10 kb from rno-mir-295-1

Mature rno-miR-295-5p

• Accession: MIMAT0012849
• Description: Rattus norvegicus rno-miR-295-5p mature miRNA
• Sequence: 13 - ACUCAAAUGUGGGGCACACUUCU - 35
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-295-3p

• Accession: MIMAT0017366
• Description: Rattus norvegicus rno-miR-295-3p mature miRNA
• Sequence: 50 - AAGUGCUACUACUUUUGGGUGU - 71
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


2. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39