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miRBase entry: eca-mir-124-2
How is the hairpin structure generated?
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We have generated a dot-bracket structure for each sequence using RNAfold.
Unambiguous secondary structure.
Parsed and ASCII art drawn.
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Stem-loop
eca-mir-124-2
Accession
MI0012755
Description
Equus caballus
eca-mir-124-2 precursor miRNA
Literature search
1 open access papers
mention eca-mir-124-2
(1 sentences)
Sequence
guguucacagcggaccuugauuuaaugucauacaauUAAGGCACGCGGUGAAUGCC
((((((((.(((..((((((((...........))))))))..))).)))))))).
Structure
- a ga uaau guguucac gcg ccuugauu g |||||||| ||| |||||||| u CGUAAGUG CGC GGAAUuaa c C G AC caua
Annotation confidence
Not enough data
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Genome context
chr9: 20522393-20522448 [-]
Database links
Mature
eca-miR-124
Accession
MIMAT0012906
Description
Equus caballus
eca-miR-124 mature miRNA
Sequence
37 - UAAGGCACGCGGUGAAUGCC - 56
Evidence
not_experimental
References
PubMed ID:
19406225
In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
"Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
"Genomics (2009) 94:125-131