Stem-loop eca-mir-194-1

Accession

MI0012793

Description

Equus caballus eca-mir-194-1 precursor miRNA

Literature search

1 open access papers mention eca-mir-194-1
(1 sentences)

Sequence

19 reads, 3 reads per million, 1 experiments

gggcucccacccccUGUAACAGCAACUCCAUGUGGAagugcccacugguuccaguggggcugcuguuaucuggggcgggggccag
.(((((((.((((..(((((((((.((((((.((((...(((....))))))))))))).)))))))))..)))).)))))))..

Structure

-g       a    cU         A      G    agu   c 
  ggcuccc cccc  GUAACAGCA CUCCAU UGGA   gcc a
  ||||||| ||||  ||||||||| |||||| ||||   |||  
  ccggggg gggg  uauugucgu ggggug accu   ugg c
ga       c    uc         c      -    ---   u 

Annotation confidence Not enough data

Genome context

chr12: 25044429-25044513 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from eca-mir-194-1

Mature eca-miR-194

• Accession: MIMAT0013050
• Description: Equus caballus eca-miR-194 mature miRNA
• Sequence: 15 - UGUAACAGCAACUCCAUGUGGA - 36
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131