Stem-loop eca-mir-380

Accession

MI0012893

Description

Equus caballus eca-mir-380 precursor miRNA

Gene family

MIPF0000126; mir-379

Sequence

514 reads, 78 reads per million, 1 experiments

aagacgguugaccauagagcaugcgcugucucuaggucgUAUGUAAUAUGGUCCACGUCUU
((((((...(((((((..(((((((((.......)).)))))))..)))))))..))))))

Structure

      guu       ga       -  gu 
aagacg   gaccaua  gcaugcg cu  c
||||||   |||||||  ||||||| ||  u
UUCUGC   CUGGUAU  UGUAUgc gg  c
      -AC       AA       u  au 

Annotation confidence Not enough data

Genome context

chr24: 42897592-42897652 [+]

Clustered miRNAs

12 other miRNAs are < 10 kb from eca-mir-380

Mature eca-miR-380

• Accession: MIMAT0013148
• Description: Equus caballus eca-miR-380 mature miRNA
• Sequence: 40 - UAUGUAAUAUGGUCCACGUCUU - 61
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131