miRBase entry: eca-mir-485

Stem-loop eca-mir-485


Accession
MI0012903
Description
Equus caballus eca-mir-485 precursor miRNA


Sequence

208 reads, 31 reads per million, 1 experiments
acuugaagAGAGGCUGGCCGUGAUGAAUUCgauucaucaaagcgaGUCAUACACGGCUCUCCUCUCUuuuagu
(((.(((((((((..(((((((((((.((((...........)))))))).)))))))..))))))))).)))

Structure
   u         CU       -    A    auuc 
acu gaagAGAGG  GGCCGUG AUGA UUCg    a
||| |||||||||  ||||||| |||| ||||    u
uga uuUCUCUCC  UCGGCAC UACU Gagc    c
   u         UC       A    -    gaaa 


Annotation confidence High
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Genome context
chr24: 42925986-42926058 [+]
Clustered miRNAs
18 other miRNAs are < 10 kb from eca-mir-485

Database links

Mature eca-miR-485-5p

Accession MIMAT0013159
Description Equus caballus eca-miR-485-5p mature miRNA
Sequence 9 - AGAGGCUGGCCGUGAUGAAUUC - 30
Evidence not_experimental

Mature eca-miR-485-3p

Accession MIMAT0013160
Description Equus caballus eca-miR-485-3p mature miRNA
Sequence 46 - GUCAUACACGGCUCUCCUCUCU - 67
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131