Stem-loop bhv1-mir-B1

Accession

MI0013173

Description

Bovine herpesvirus 1 bhv1-mir-B1 precursor miRNA

Sequence

gACACGAGAUCUGGACGACGAGguccucggcguuggcggccgccgggaacgccagcccgucgcccgcgcacgacaggcacucaaugucaaagcacagcagcuuguaguc
((((((((.((((..((((((((((.(((((((.((((((.((.((.....)).))..)))))).)))).)))..))).)))...)))...)..))).).))))).)))

Structure

   -     A -   GA ---   ---   -   -c   -    u      -c  c  g 
gAC ACGAG U CUG  C   GAC   GAG guc  ucg gcgu ggcggc  gc gg a
||| ||||| | |||  |   |||   ||| |||  ||| |||| ||||||  || || a
cug uguuc a gac  g   cug   cuc cgg  agc cgcg ccgcug  cg cc c
   a     g c   ac aaa   uaa   a   ac   a    c      cc  a  g 

Annotation confidence Not enough data

Genome context

Unknown

Mature bhv1-miR-B1

• Accession: MIMAT0013962
• Description: Bovine herpesvirus 1 bhv1-miR-B1 mature miRNA
• Sequence: 2 - ACACGAGAUCUGGACGACGAG - 22
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19793906
   Characterization of microRNAs encoded by the bovine herpesvirus 1 genome
   "Glazov EA, Horwood PF, Assavalapsakul W, Kongsuwan K, Mitchell RW, Mitter N, Mahony TJ"
   "J Gen Virol (2010) 91:32-41