Stem-loop rlcv-mir-rL1-18

Accession

MI0013277

Description

Rhesus lymphocryptovirus rlcv-mir-rL1-18 precursor miRNA

Sequence

aggugugggguuUAGAUGAUUGGGGGCGGCGUAUCuuuugauuugguaaaagUUAGCCCCUCCCCAUCAUCUUGacaccacauuu
.(((((((.(((.(((((((.(((((.(((....((((((......))))))...))).))))).))))))).))).))))))).

Structure

a       g   U       U     C   GUAU      au 
 ggugugg guu AGAUGAU GGGGG GGC    Cuuuug  u
 ||||||| ||| ||||||| ||||| |||    ||||||   
 uuacacc caG UCUACUA CCCUC CCG    gaaaau  u
u       a   U       C     C   -AUU      gg 

Annotation confidence Not enough data

Genome context

Unknown

Mature rlcv-miR-rL1-18-3p

• Accession: MIMAT0016941
• Description: Rhesus lymphocryptovirus rlcv-miR-rL1-18-3p mature miRNA
• Sequence: 53 - UUAGCCCCUCCCCAUCAUCUUG - 74
• Evidence: experimental ; Northern [1], PCR [1], Illumina [2-3]

Mature rlcv-miR-rL1-18-5p

• Accession: MIMAT0019186
• Description: Rhesus lymphocryptovirus rlcv-miR-rL1-18-5p mature miRNA
• Sequence: 13 - UAGAUGAUUGGGGGCGGCGUAUC - 35
• Evidence: experimental ; Illumina [2-3]

References

1. PubMed ID: 19889779
   A global analysis of evolutionary conservation among known and predicted gammaherpesvirus microRNAs
   "Walz N, Christalla T, Tessmer U, Grundhoff A"
   "J Virol (2010) 84:716-728


2. PubMed ID: 20219930
   Comprehensive analysis of Rhesus lymphocryptovirus microRNA expression
   "Riley KJ, Rabinowitz GS, Steitz JA"
   "J Virol (2010) 84:5148-5157


3. PubMed ID: 24257599
   Evolutionary conservation of primate lymphocryptovirus microRNA targets
   "Skalsky RL, Kang D, Linnstaedt SD, Cullen BR"
   "J Virol (2014) 88:1617-1635