Stem-loop rlcv-mir-rL1-24

Accession

MI0013283

Description

Rhesus lymphocryptovirus rlcv-mir-rL1-24 precursor miRNA

Gene family

MIPF0000948; mir-BART18

Sequence

cgugcgggugcccuggCUCAAGUUCUCAUUUCCAAUACaguuugagaaccuugUAUCGGAGAUAGGACUUGAUACCaguuugcccgaug
(((.((((((..((((.(((((((((.((((((.((((((..........)))))).)))))))))))))))..))))..)))))))))

Structure

   g      cc    -C         C      A      uuug 
cgu cgggug  cugg  UCAAGUUCU AUUUCC AUACag    a
||| ||||||  ||||  ||||||||| |||||| ||||||     
gua gcccgu  gaCC  AGUUCAGGA UAGAGG UAUguu    g
   -      uu    AU         -      C      ccaa 

Annotation confidence Not enough data

Genome context

Unknown

Mature rlcv-miR-rL1-24-5p

• Accession: MIMAT0016947
• Description: Rhesus lymphocryptovirus rlcv-miR-rL1-24-5p mature miRNA
• Sequence: 17 - CUCAAGUUCUCAUUUCCAAUAC - 38
• Evidence: experimental ; Northern [1], PCR [1], Illumina [2-3]

Mature rlcv-miR-rL1-24-3p

• Accession: MIMAT0016948
• Description: Rhesus lymphocryptovirus rlcv-miR-rL1-24-3p mature miRNA
• Sequence: 54 - UAUCGGAGAUAGGACUUGAUACC - 76
• Evidence: experimental ; Northern [1], PCR [1], Illumina [2-3]

References

1. PubMed ID: 19889779
   A global analysis of evolutionary conservation among known and predicted gammaherpesvirus microRNAs
   "Walz N, Christalla T, Tessmer U, Grundhoff A"
   "J Virol (2010) 84:716-728


2. PubMed ID: 20219930
   Comprehensive analysis of Rhesus lymphocryptovirus microRNA expression
   "Riley KJ, Rabinowitz GS, Steitz JA"
   "J Virol (2010) 84:5148-5157


3. PubMed ID: 24257599
   Evolutionary conservation of primate lymphocryptovirus microRNA targets
   "Skalsky RL, Kang D, Linnstaedt SD, Cullen BR"
   "J Virol (2014) 88:1617-1635