Stem-loop esi-MIR3454c

Accession

MI0014674

Description

Ectocarpus siliculosus esi-MIR3454c precursor miRNA

Gene family

MIPF0001097; MIR3454

Sequence

gaguuuUUCCCAGCUCCGACGGGAUGGcacucgugacuaguuccgccgccuuguaucacacgagcguguguauccccgugcgacucaaggcggcggaacuagcgacgagcgccCUUCCAUCGGAGCUGGGUAGaauuca
(((((((.(((((((((((.((((.(((.(((((..(((((((((((((((((..((.((((.(.(.......)).)))).))..)))))))))))))))))..))))).))).)))).))))))))))).))))))).

Structure

-       U           C    U   a     ga                 ua  a    a c ug 
 gaguuuU CCCAGCUCCGA GGGA GGc cucgu  cuaguuccgccgccuug  uc cacg g g  u
 ||||||| ||||||||||| |||| ||| |||||  |||||||||||||||||  || |||| | |  g
 cuuaaGA GGGUCGAGGCU CCUU ccg gagca  gaucaaggcggcggaac  ag gugc c c  u
a       U           A    C   c     gc                 uc  c    c - ua 

Annotation confidence Not enough data

Genome context

sctg_168: 254054-254192 [-]

Clustered miRNAs

6 other miRNAs are < 10 kb from esi-MIR3454c

Mature esi-miR3454c-5p

• Accession: MIMAT0017751
• Description: Ectocarpus siliculosus esi-miR3454c-5p mature miRNA
• Sequence: 7 - UUCCCAGCUCCGACGGGAUGG - 27
• Evidence: experimental ; Illumina [1]

Mature esi-miR3454c-3p

• Accession: MIMAT0017752
• Description: Ectocarpus siliculosus esi-miR3454c-3p mature miRNA
• Sequence: 114 - CUUCCAUCGGAGCUGGGUAG - 133
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20520714
   The Ectocarpus genome and the independent evolution of multicellularity in brown algae
   "Cock JM, Sterck L, Rouze P, Scornet D, Allen AE, Amoutzias G, Anthouard V, Artiguenave F, Aury JM, Badger JH, Beszteri B, Billiau K, Bonnet E, Bothwell JH, Bowler C, Boyen C, Brownlee C, Carrano CJ, Charrier B, Cho GY, Coelho SM, Collen J, Corre E, Da Sil"
   "Nature (2010) 465:617-621