Stem-loop esi-MIR3450

Accession

MI0014677

Description

Ectocarpus siliculosus esi-MIR3450 precursor miRNA

Sequence

gucguugggUACAUCGCCCGACCACUCUAUgaaaccgggucauucccgaccgaaguucguccaaaggcaaggcaccuuucgacggaccccggucagcaaugacccgguuuuaUAGAAUGGUCUGGCGACGUACcaacgaa
.(((((((.(((.(((((.(((((.(((((((((((((((((((.(.(((((..(((((((.(((((.......))))).)))))))..))))).).))))))))))))))))))).))))).))))).)))))))))).

Structure

g       g   A     C     C                   c c     aa       c     ca 
 ucguugg UAC UCGCC GACCA UCUAUgaaaccgggucauu c gaccg  guucguc aaagg  a
 ||||||| ||| ||||| ||||| ||||||||||||||||||| | |||||  ||||||| |||||  g
 agcaacC AUG AGCGG CUGGU AGAUauuuuggcccaguaa g cuggc  caggcag uuucc  g
a       -   C     U     A                   c a     cc       c     ac 

Annotation confidence Not enough data

Genome context

sctg_11: 959792-959931 [+]

Mature esi-miR3450-5p

• Accession: MIMAT0017757
• Description: Ectocarpus siliculosus esi-miR3450-5p mature miRNA
• Sequence: 10 - UACAUCGCCCGACCACUCUAU - 30
• Evidence: experimental ; Illumina [1]

Mature esi-miR3450-3p

• Accession: MIMAT0017758
• Description: Ectocarpus siliculosus esi-miR3450-3p mature miRNA
• Sequence: 113 - UAGAAUGGUCUGGCGACGUAC - 133
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20520714
   The Ectocarpus genome and the independent evolution of multicellularity in brown algae
   "Cock JM, Sterck L, Rouze P, Scornet D, Allen AE, Amoutzias G, Anthouard V, Artiguenave F, Aury JM, Badger JH, Beszteri B, Billiau K, Bonnet E, Bothwell JH, Bowler C, Boyen C, Brownlee C, Carrano CJ, Charrier B, Cho GY, Coelho SM, Collen J, Corre E, Da Sil"
   "Nature (2010) 465:617-621